\documentclass[reqno]{amsart}
\usepackage{hyperref}
\usepackage{graphicx}

\AtBeginDocument{{\noindent\small
\emph{Electronic Journal of Differential Equations},
Vol. 2009(2009), No. 76, pp. 1--10.\newline
ISSN: 1072-6691. URL: http://ejde.math.txstate.edu or http://ejde.math.unt.edu
\newline ftp ejde.math.txstate.edu}
\thanks{\copyright 2009 Texas State University - San Marcos.}
\vspace{8mm}}

\begin{document}
\title[\hfilneg EJDE-2009/76\hfil Hopf bifurcation in simple food chain model]
{Hopf bifurcation for simple food chain model with delay}

\author[M. Cavani, T. Lara, S. Romero\hfil EJDE-2009/76\hfilneg]
{Mario Cavani, Teodoro Lara, Sael Romero}  % in alphabetical order

\address{Mario Cavani \newline
Departamento de Matem\'{a}ticas, N\'{u}cleo de Sucre,
Universidad de Oriente, Cuman\'{a} 6101, Venezuela}
\email{mcavani@sucre.udo.edu.ve}

\address{Teodoro Lara \newline
Departamento de  F\'{\i}sica y Matem\'{a}ticas, Universidad de los Andes,
N\'ucleo Univeristario Rafael Rangel, Trujillo, Venezuela}
\email{tlara@ula.ve}

\address{Sael Romero \newline
Departamento de Matem\'{a}ticas, N\'{u}cleo de Sucre,
Universidad de Oriente, Cuman\'{a} 6101, Venezuela}
\email{sromero@sucre.udo.edu.ve}

\thanks{Submitted May 11, 2009. Published June 16, 2009.}
\subjclass[2000]{34D99}
\keywords{Simple food chain model; Hopf bifurcation; Holling type I; attractor}

\begin{abstract}
 In this article we consider a chemostat-like model for a
 simple food chain where there is a well stirred nutrient substance
 that serves as food for a prey population of microorganisms,
 which in turn, is the food for a predator population of microorganisms.
 The nutrient-uptake of each microorganism is of Holling type I
 (or Lotka-Volterra) form.
 We show the existence of a global attractor for solutions of this
 system. Also we show that the positive globally asymptotically stable
 equilibrium point of the system undergoes a Hopf bifurcation when
 the dynamics of the microorganisms at the bottom of the chain depends
 on the history of the prey population by means of a distributed
 delay that takes an average of the microorganism in the middle of
 the chain.
\end{abstract}

\maketitle
\numberwithin{equation}{section}
\newtheorem{theorem}{Theorem}[section]
\newtheorem{lemma}[theorem]{Lemma}

\section{Introduction}

 We consider the food chain model
\begin{equation} \label{eq1}
\begin{gathered}
S'(t)=(S^{0}-S(t))D-\frac{b}{\gamma } S(t)X(t),   \\
X'(t)=X(t)(bS(t)-D-\frac{d}{\eta } Y(t)),  \\
Y'(t)=Y(t)(dX(t)-D),
\end{gathered}
\end{equation}
where $S(0)=S_{0}\geq 0$, $X(0)=X_{0}\geq 0$, $Y(0)=Y_{0}\geq
0$.  These equations are in the form of the chemostat model
\cite{smithwaltman95}. The meaning of the variables and
parameters is as follows:
$S(t)$ denotes the substrate concentration,
$X(t)$ is  the concentration of a prey
microorganism population that grows eating the substrate, and
$Y(t)$ the concentration of a predator
microorganism population that eats the prey microorganism. The
functional responses of the species $X(t)$ and $Y(t)$ are of the so
called Holling type I (or Lotka-Volterra) form
(see \cite{holling59}), where the parameters $b$ and $d$ denote the
per capita growth rate of the prey and the predator
respectively; $\gamma $ and $\eta $ represent the growth yield
constants of the microorganisms $X(t)$ and $Y(t)$ respectively. The
parameter $S^{0}$ is the concentration in the feed bottle and $D$
denotes the input rate from the feed bottle and the washout rate
from the growth chamber. This model may be considered as a
specialization of some of the systems given in \cite{BWolkowicz86},
 we shall perform a wide description of the
global dynamic of this model in order to point out the differences
between the dynamic of this system and the one corresponding to a
system with a distributed delay that we propose in order to model
the case when  the existence of a  significative time lag in the
growth of the predator microorganism is considered. The recognition
of time delays in the growth response of a population to changes in
the environment has led to extensive theoretical and experimental
studies, however there has been
little emphasis in distributed delays in chemostat models,
\cite{Wolkowicz1} is very important reference in this direction.
Thus, we are assuming in a more realistic fashion that the growth of the
predator is influenced by the amount of prey in the past. More
precisely, we suppose as for example in \cite{Cushing} or
\cite{Wolkowicz1}, that the predator grows up depending on the
weight average over the past by mean of the the function $Z(t)$
given by the following integral
\begin{equation} \label{chv1}
Z(t):=\int_{-\infty }^{t}dX(\tau )Y(\tau )
e^{-D(t-\tau )}(\alpha e^{-\alpha (t-\tau )
})d\tau ,\quad \alpha >0,
\end{equation}
 therefore, we have the integro-differential system
\begin{equation} \label{eq2}
\begin{gathered}
S'(t)=(S^{0}-S(t))D-\frac{b}{\gamma } S(t)X(t),   \\
X'(t)=X(t)(bS(t)-D-\frac{d}{\eta } Y(t)),   \\
Y'(t)=\int\nolimits_{-\infty }^{t}dX(\tau)Y(\tau )e^{-D(t-\tau )}(\alpha
e^{-\alpha (t-\tau )})d\tau -DY(t),
\end{gathered}
\end{equation}
$S(0)=S_{0}\geq 0$, $X(0)=X_{0}\geq 0$, $Y(0)=Y_{0}(t)=\varphi (t)\geq 0$
$(t\leq 0)$. Clearly these assumptions imply that the influence of
the past\ is fading away exponentially and the number
$\frac{1}{\alpha }$ could be
interpreted as the measure of the influence of the past. So, to smaller
$\alpha >0$, the interval in the past in which the values of $X$ are
taken, is bigger (\cite{Cushing,Farkasmotion,MacD1,Wolkowicz1}).
Also we assume that initial
function $\varphi$ is in $ BC_{+}$, the Banach space of the bounded
and continuous functions from  $(-\infty ,0]$ to $\mathbb{R}_{+}$.

To make the model in more treatable way we perform the
change of variables:
\begin{gather*}
\overline{t}= tD,\quad  \overline{S} = \frac{S}{S^{0}},\quad
\overline{X}= \frac{X}{\gamma S^{0}},\quad
\overline{Y}= \frac{Y}{\eta \gamma S^{0}}, \\
\overline{b}=\frac{bS^{0}}{D},\quad
\overline{d}= \frac{\gamma dS^{0}}{D}, \quad
\overline{\alpha } = \frac{\alpha }{D}.
\end{gather*}
Omitting the bars, the nondimensional version of models (\ref{eq1})
and (\ref{eq2}) can be rewritten, respectively, as
\begin{equation} \label{ndeq1}
\begin{gathered}
S'(t)=1-S(t)-bS(t)X(t),   \\
X'(t)=X(t)(bS(t)-1-dY(t)),   \\
Y'(t)=Y(t)(dX(t)-1),
\end{gathered}
\end{equation}
and
\begin{equation} \label{ndeq2}
\begin{gathered}
S'(t)=1-S(t)-bS(t)X(t),   \\
X'(t)=X(t)(bS(t)-1-dY(t)),   \\
Y'(t)=\int\nolimits_{-\infty }^{t}dX(\tau
)Y(\tau )\alpha e^{-(\alpha +1)(t-\tau )
}d\tau -Y(t).
\end{gathered}
\end{equation}

In this article we show the existence of the global attractor for the
solutions of the foregoing systems. We also show that the
positive globally asymptotically stable equilibrium point of
\eqref{ndeq1} loses  its stability when we model the food chain by
\eqref{ndeq2}. In this case the equilibrium of positive coordinates
undergoes a Hopf bifurcation and more realistic periodic solutions
gain the stability.

\section{A simple food chain without delay}

Here we show some properties  of system \eqref{ndeq1}.

\begin{lemma} \label{lem1}
The positive cone, $\mathbb{R}_{+}^{3}$, is positively invariant
with respect to \eqref{ndeq1}.
\end{lemma}

\begin{proof}
As we can see, if $S(t^{\ast })=0$ for some $t^{\ast }\geq 0$ then
$S(t)\geq 0$ for all $t\geq t^{\ast }$. The positiveness of the
functions $X(t)$ and $Y(t)$ are straightforward checked once
the corresponding equations are considered.
\end{proof}

Note that by adding  the three equations of \eqref{ndeq1}  and
defining  $W(t)=1-S(t)-X(t)-Y(t)$,  we obtain a single
equation
\begin{equation*}
W'(t)=-W(t)
\end{equation*}
with $W(0)>0$. It is easy to verify  that $\lim_{t\to \infty}W(t)=0$
and that the convergence is exponential. This implies that
 \eqref{ndeq1} has the property of pointwise dissipativity in
the sense that there exists a bounded set $B$ to which the solutions
eventually enter and remain. Thus we have shown the following

\begin{lemma}[Dissipativity] \label{lem2}
 System \eqref{ndeq1} is pointwise dissipative. Moreover, the
attractors of the solutions  are located on the
manifold
\begin{equation}
\Sigma =\{ (S,X,Y)\in \mathbb{R}_{+}^{3}:S+X+Y=1\} .
\label{sigma}
\end{equation}
\end{lemma}

The pointwise dissipative property implies the existence of a unique
global attractor of \eqref{ndeq1} which must lie in the
manifold $\Sigma $.

\begin{lemma} \label{lem3}
 If $d\leq 1$, the predator population $Y(t)$ dies out.
\end{lemma}

\begin{proof}
By taking into account the equation for $Y(t)$ in \eqref{ndeq1} and
applying comparative arguments the result follows.
\end{proof}

By virtue of the previous lemma we shall assume for the rest of this
article that
\begin{equation}
d>1.  \label{h1}
\end{equation}
Another important conclusion of the Dissipativity lemma is that the
system can be simplified by  eliminating  one variable. In fact
by taking
\begin{equation*}
S(t)=1-X(t)-Y(t),
\end{equation*}
we obtain the following system of two ordinary differential equations
\begin{equation} \label{twoeq}
\begin{gathered}
X'(t)=(b-1)X(t)-bX^{2}(t)-(b+d)X(t)Y(t),   \\
Y'(t)=Y(t)(dX(t)-1).
\end{gathered}
\end{equation}
Figure \ref{fig1} shows some numerical examples for the above equation with several
values of $b$ and $ d$.

\begin{figure}[ht] \label{fig1}
\begin{center}
\includegraphics[width=0.7\textwidth]{fig1}
\end{center}
\caption{$b< 1$ and both species extinguish}
\end{figure}


\begin{lemma} \label{lem4}
If  $b\leq 1$ in \eqref{twoeq}, the prey  $X(t)$ and predator
populations $ Y(t)$ die out.
\end{lemma}

The proof runs in the same fashion as in Lemma \ref{lem3}.
As a consequence of the previous result we will assume in the
sequel that $b>1$.


System \eqref{twoeq} has three equilibrium points given by
\begin{equation*}
E_{0}=(0,0), \quad
E_{1}=\big(\frac{b-1}{b},0\big), \quad
E_{2}=\big(\frac{1}{d},\frac{d(b-1)-b}{d(b+d)}\big).
\end{equation*}
The stability properties of these points are summarized as follows.

\begin{theorem}
\begin{itemize}
\item[(i)] If $b<1$, then $E_{0}$ is the unique equilibrium point of
\eqref{twoeq} in the positive cone and is globally asymptotically
stable.

\item[(ii)] If $b=1$, the point $E_{0}$ undergoes a node-saddle
bifurcation. And for $b>1$  the equilibrium point $E_{1}$ shows up,
and it is globally asymptotically stable for $1<b<\frac{d}{d-1}$.

\item[(iii)] If $b=\frac{d}{d-1}$, the point $E_{1}$ undergoes a
node-saddle bifurcation. And for $b=\frac{d}{d-1}$  the equilibrium
point $ E_{2}$ shows up, and it  is globally asymptotically stable
for
\begin{equation}
b>\frac{d}{d-1}.  \label{desig1}
\end{equation}
\end{itemize}
\end{theorem}

\begin{proof}
Parts (i) and (ii) follow immediately from a linear analysis of the
equilibria solutions $E_{0}$ and $E_{1}$.
To show  (iii)  we use  Dulac's  Criterion \cite{Farkasmotion}.
Let $f_{1}(X,Y)$ and
$f_{2}(X,Y)$ be the corresponding functions in the right hand side
of \eqref{twoeq} for $X'(t)$ and $Y'(t)$
respectively. In our case we look for a function of the form
$h(X,Y)=X^{\alpha }Y^{\delta }$ such that the expression
$\frac{\partial hf_{1}}{\partial X}+\frac{\partial
hf_{2}}{\partial Y}$ is not zero and does not change its sign while
$X>0$ and $Y>0$. In doing so, we see that
\begin{equation} \label{dulac}
\begin{aligned}
&\frac{\partial (hf_{1})(X,Y)}{\partial X}+\frac{\partial (hf_{2})(X,Y)}{
\partial Y} \\
&=[ (\alpha +1)(b-1)-(\delta +1)] X^{\alpha}Y^{\delta }
+[ (\delta +1)d-b(\alpha +2)] X^{\alpha +1}Y^{\delta }\\
&\quad -(b+d)(\alpha +1)X^{\alpha }Y^{\delta +1}.
\end{aligned}
\end{equation}
Therefore, while $X>0$ and $Y>0$, \eqref{dulac} will be  negative if
we can find  values of $\alpha $ and $\delta $ such that
\begin{gather*}
(\alpha +1)-\frac{\delta +1}{b-1} \leq 0,   \\
(\alpha +2)-\frac{d}{b}(\delta +1) \geq 0.
\end{gather*}
But it is an easy task  to guarantee the existence of such a values
 $\alpha ^{\ast }$ and $\delta ^{\ast }$
  for which the previous\ inequalities hold, and therefore the function
$h(X,Y)=X^{\alpha ^{\ast }}Y^{\delta ^{\ast }}$ satisfies the
conditions we were looking for. Hence by applying the Dulac's
 Criterion to this function we conclude that \eqref{twoeq} has no
periodic orbits and the Poincar\'{e}-Bendixson theory implies that
equilibrium point $E_{2}$ is globally asymptotically stable.
\end{proof}

\section{A simple food chain with delay}

Now we  considered the delayed model  given by \eqref{ndeq2}. If we
take $Z(t)$ in (\ref{chv1}) as a change of variable, then following
system shows up.
\begin{equation} \label{eq3}
\begin{gathered}
S'(t)=1-S(t)-bS(t)X(t),   \\
X'(t)=X(t)(bS(t)-1-dY(t)),   \\
Y'(t)=Z(t)-Y(t),   \\
Z'(t)=\alpha dX(t)Y(t)-(\alpha +1)Z(t),
\end{gathered}
\end{equation}
with $S(0)=S_{0}\geq 0$, $X(0)=X_{0}\geq 0$,
$Y(0)=Y_{0}\geq 0$, $Z(0)=\varphi (0)\geq 0$.
The relations between the solutions of
this system and those of \eqref{ndeq2} are as in the corresponding
description given in \cite{CLS}.
The properties of positiveness and pointwise dissipativeness hold as
in the non-delay model and consequently similar results can be
stated and proved.
\begin{lemma}
The positive cone, $\mathbb{R}_{+}^{4}$, is positively invariant
with respect to \eqref{eq3}.
\end{lemma}

Now we set $U(t)=1-S(t)-X(t)-Y(t)-\frac{Z(t)}{\alpha }$, and obtain
single equation,
\begin{equation*}
U'(t)=-U(t)
\end{equation*}
with $U(0)>0$. From here, $\lim_{t\to \infty }U(t)=0$ and
the convergence is exponential, and again  as before
\eqref{eq3} has the property of pointwise dissipativity.

\begin{lemma}[Dissipativity] \label{lem7}
The system \eqref{eq3} is pointwise dissipative. Moreover the
attractors of the system are located on the manifold
\begin{equation}
\Lambda =\{ (S,X,Y,Z)\in \mathbb{R}_{+}^{4}:S+X+Y+\frac{Z}{\alpha }
=1\} .  \label{lambda}
\end{equation}
\end{lemma}

The pointwise dissipative property implies the existence of a unique
global attractor of \eqref{eq3} which must lie in the manifold
$\Lambda $.

As before the system can be simplified by the elimination of one variable.
In this case we take
\begin{equation*}
S(t)=1-X(t)-Y(t)-\frac{Z(t)}{\alpha }
\end{equation*}
and  obtain a system of three ordinary differential equations,
\begin{equation} \label{3deq}
\begin{gathered}
X'(t)=(b-1)X(t)-bX^{2}(t)
-(b+d)X(t)Y(t)-\frac{b}{\alpha }X(t)Z(t),   \\
Y'(t)=Z(t)-Y(t),   \\
Z'(t)=\alpha dX(t)Y(t)-(\alpha +1)Z(t).
\end{gathered}
\end{equation}
See illustration in   Figure \ref{fig2}.

\begin{figure}[ht] \label{fig2}
\begin{center}
\includegraphics[width=0.7\textwidth]{fig1}
\end{center}
\caption{$b< 1$ and all  species extinguish}
\end{figure}

This system  has three equilibrium points:
\[
P_{0} =(0,0,0),\quad
P_{1}=(\frac{b-1}{b},0,0), \quad
P_{2}=(X^{\ast },Y^{\ast },Y^{\ast }),
\]
where
\[
X^{\ast } =\frac{\alpha +1}{\alpha d},\quad
Y^{\ast }=\frac{\alpha d(b-1)-b(\alpha +1)}{d(b(\alpha +1)+\alpha d)}.
\]
The expression for $P_{2}$  makes sense only when
$\alpha d(b-1)-b(\alpha +1)>0$, inequality that is equivalent to
\begin{equation}\label{Eq}
X^{\ast }<\frac{b-1}{b}\,.
\end{equation}
For $b>1$, the right hand side of \ref{Eq} implies
$X^{\ast }<1$.
The stability properties of these equilibrium points are summarized
as follows.

\begin{theorem} \label{thm8}
\begin{itemize}
\item[(i)] If $b<1$, then $P_{0}$ is the unique equilibrium point
of  \eqref{3deq} in the positive cone and it is globally asymptotically
stable.

\item[(ii)] If $b=1$, $P_{0}$ undergoes a node-saddle bifurcation. For
$b>1$,  $P_{1}$ appears and it is globally asymptotically stable for
$b(\alpha +1)-\alpha d(b-1)\geq 0$, or equivalently
\begin{equation*}
1<d\leq \frac{(\alpha +1)b}{\alpha (b-1)}.
\end{equation*}

\item[(iii)] If $d=\frac{(\alpha +1)b}{\alpha (b-1)}$, $E_{1}$
undergoes a node-saddle bifurcation. For
\begin{equation}
d>\frac{(\alpha +1)b}{\alpha (b-1)}  \label{ineqE2}
\end{equation}
the point $P_{2}$ appears and  has  positive coordinates.
\end{itemize}
\end{theorem}

The proof of the above theorem
follows  from a linear analysis of the equilibria
solutions.
Stability properties of the equilibrium point $E_{2}$ are given
in the following result.

\begin{theorem} \label{thm9}
There exists a value  $\ d^{\ast }$ satisfying   \eqref{ineqE2}
 and if $d<d^{\ast }$,  $E_{2}$ is locally asymptotically stable. If
$d=d^{\ast }$ then  $E_{2}$ undergoes a supercritical Hopf
bifurcation.
\end{theorem}

\begin{proof}
The Jacobian matrix of  \eqref{3deq} at the equilibrium  $E_{2}$ is
given by
\[
A=\begin{bmatrix}
-bX^{\ast } & -(b+d)X^{\ast } & -\frac{b}{\alpha }X^{\ast } \\
0 & -1 & 1 \\
\alpha dY^{\ast } & \alpha +1 & -(\alpha +1)
\end{bmatrix}
\]
and the corresponding characteristic polynomial is
\begin{equation}
p(\lambda )=\lambda ^{3}+a_{2}\lambda ^{2}+a_{1}\lambda +a_{0},  \label{poly}
\end{equation}
where
\begin{equation*}
a_{2}=(\alpha +2+bX^{\ast }),\quad
a_{1}=bX^{\ast }(\alpha +2+dY^{\ast }),\quad
a_{0}=(\alpha +1)(b-1-bX^{\ast }).
\end{equation*}
To apply the Routh-Hurwitz Criterion we note that
$a_{0},a_{1},a_{2}$ are positive  and check the sign of
\begin{equation*}
\Phi =a_{2}a_{1}-a_{0}.
\end{equation*}
But the sign of $\Phi $ is the same of $\Psi$, where
\begin{equation*}
\Psi (d)=\frac{\alpha ^{2}d^{2}(1+bX^{\ast })}{X^{\ast }}
(a_{2}a_{1}-a_{0})\,.
\end{equation*}
The above expression  can be written as
\begin{equation*}
\Psi (d)=c_{3}d^{3}+c_{2}d^{2}+c_{1}d+d_{0},
\end{equation*}
where
\begin{gather*}
c_{3} =-\alpha ^{3}(b-1), \\
c_{2} =\alpha ^{2}b((\alpha +2)b+(\alpha +1)(\alpha +3)), \\
c_{1} =\alpha (\alpha +1)b^{2}(b+(\alpha +1)(\alpha +3)), \\
c_{0} =(\alpha +1)^{3}b^{3}.
\end{gather*}

Here are some properties of  $\Psi $  and   $\Psi'  $:
\begin{gather*}
\lim_{d\to -\infty }\Psi (d)=+\infty ,\quad
\Psi (0)>0, \quad \lim_{d\to +\infty }\Psi (d)=-\infty , \\
\lim_{d\to -\infty }\Psi '(d)=-\infty ,\quad
\Psi '(0)>0,\quad  \lim_{d\to +\infty }\Psi '(d)=-\infty \,.
\end{gather*}
Therefore, there exists a unique value $d_{1}$ such
that $\Psi '(d)>0 $ for $0<d<d_{1}$, $\Psi '(d_{1})=0$ and
$\Psi '(d)<0$ for $d>d_{1}$. This means
that $\Psi (d)$ increases for $0\leq d<d_{1}$ and decreases for
$d>d_{1}$. But the we can guarantee the existence of   a unique
value $d^{\ast }>d_{1}$, such that $\Psi (d)>0$ for $0<d<d^{\ast }$,
$\Psi (d^{\ast })=0$, and $\Psi (d)<0$ for $d>d^{\ast }$. Moreover,
since $c_{2}>2\alpha ^{2}(\alpha +1) $,
\begin{equation*}
d^{\ast }>d_{1}>\frac{(\alpha +1)b}{\alpha (b-1)}>1,
\end{equation*}
 so Routh-Hurwitz  implies that $E_{2}$ is locally
asymptotically stable for $d<d^{\ast }$ and unstable for
$d>d^{\ast }$. For $d=d^{\ast }$ the equilibrium undergoes
a Hopf bifurcation.
In fact,
\begin{equation*}
\lambda ^{3}+a_{2}(d^{\ast })\lambda ^{2}+a_{1}(d^{\ast })\lambda
+a_{0}(d^{\ast })=(\lambda ^{2}+a_{1}(d^{\ast }))(\lambda
+a_{2}(d^{\ast })).
\end{equation*}
To check  the Hopf bifurcation, we set
$\lambda _{1}(d^{\ast })$ as the root of (\ref{poly}) that assume
the value
$i\omega $, $\omega ^{2}=a_{1}(d^{\ast })$, at $d^{\ast }$ and by
\begin{equation*}
F(\lambda ,d)=\lambda ^{3}+a_{2}(d)\lambda ^{2}+a_{1}(d)\lambda +a_{0}(d)
\end{equation*}
the characteristic polynomial (\ref{poly}) as a function of
$d$. Thus the derivative of the implicit function $\lambda _{1}$  at
$d^{\ast } $ is
\[
\lambda _{1}'(d^{\ast })
=-\frac{F_{d}'(i\omega ,d^{\ast})}{F_{\lambda }'(i\omega ,d^{\ast })}
=-\frac{a_{2}'(d^{\ast })(i\omega )^{2}+a_{1}'(d^{\ast
})(i\omega )+a_{0}'(d^{\ast })}{3(i\omega )^{2}+2a_{2}(d^{\ast
})(i\omega )+a_{1}'(d^{\ast })},
\]
and
\begin{align*}
( \mathop{\rm Re}(\lambda _{1}(d^{\ast }))_{d}'
&=\mathop{\rm Re}((\lambda _{1})_{d}'(d^{\ast })) \\
&=-\frac{(a_{1}(d^{\ast })a_{2}(d^{\ast })-a_{0}(d^{\ast }))_{d}'}{
a_{1}(d^{\ast })(1+a_{2}^{2}(d^{\ast }))} \\
&=-\frac{a_{2}(d^{\ast })b\left[ X_{d}^{\ast \prime }(\alpha +2+dY^{\ast
})+X^{\ast }(Y^{\ast }+dY_{d}^{\ast \prime })\right] }{a_{1}(d^{\ast
})(1+a_{2}^{2}(d^{\ast }))},
\end{align*}
after some boring calculations we can see that the quantity between
brackets is negative, therefore
$(\mathop{\rm Re}(\lambda _{1}(d^{\ast }))_{d}'>0 $, and so the
transversality condition required for the Hopf bifurcation holds.

To verify the properties of stability of the periodic orbit
we need to translate  \eqref{3deq} and locate its origin
at the equilibrium point $(X^{\ast },Y^{\ast },Y^{\ast })$.
In this case the new system is
\begin{equation} \label{eqtrans}
\begin{gathered}
x' =-bX^{\ast }x-(b+d)X^{\ast }y-\frac{b}{\alpha }X^{\ast
}z-bx^{2}-(b+d)xy-\frac{b}{\alpha }xz,   \\
y' =-y+z,   \\
z' =\alpha dY^{\ast }x+\alpha dX^{\ast }y-(\alpha +1)z+\alpha dxy.
\end{gathered}
\end{equation}
We perform the following change of variables to transform the
above system in a normal form
\begin{equation*}
\begin{bmatrix}
x \\
y \\
z
\end{bmatrix}
=T\begin{bmatrix}
u \\
v \\
w
\end{bmatrix} ,
\end{equation*}
where $T$ is the $3\times 3$ matrix whose first and second columns
are the real and imaginary part of the eigenvector associated with
the eigenvalue $\lambda _{1}(d^{\ast })$ and the third column
is the eigenvector associated to the eigenvalue
$\lambda _{0}(d^{\ast })=-a_{2}(d^{\ast})$. Indeed
\begin{equation*}
T=\begin{bmatrix}
A & B & C \\
\frac{1}{\omega } & 1 & 1 \\
\frac{1}{\omega } & 0 & D
\end{bmatrix}
\end{equation*}
where
\begin{gather*}
A =-\frac{bX^{\ast }(\omega ^{2}+(\alpha d+b(\alpha +1))X^{\ast })}{
\omega ^{2}+bX^{\ast }},\quad
B=\frac{1}{\alpha }+\frac{\omega (\omega
^{2}+(\alpha d+b(\alpha +1))X^{\ast })}{\omega ^{2}+bX^{\ast }}, \\
C =-\frac{b+d}{b}+(\frac{1}{\alpha }-\frac{\alpha +2+bX^{\ast }}{
bX^{\ast }})(\alpha +1+bX^{\ast }),\quad
D=-(\alpha +1+bX^{\ast }).
\end{gather*}
Therefore, the system (\ref{eqtrans}) takes the form
\begin{equation} \label{eq4}
\begin{gathered}
u' =\omega v+G_{1}(u,v,w),   \\
v' =-\omega u+G_{2}(u,v,w),   \\
w' =-a_{2}(d^{\ast })w+G_{3}(u,v,w),
\end{gathered}
\end{equation}
with
\begin{align*}
\begin{bmatrix}
G_{1}(u,v,w) \\
G_{2}(u,v,w) \\
G_{3}(u,v,w)
\end{bmatrix}
 &=T^{-1}\begin{bmatrix}
F_{1}(Au+Bv+Cw,\frac{u}{\omega }+v+w,\frac{u}{\omega }+Dw) \\
F_{2}(Au+Bv+Cw,\frac{u}{\omega }+v+w,\frac{u}{\omega }+Dw) \\
F_{3}(Au+Bv+Cw,\frac{u}{\omega }+v+w,\frac{u}{\omega }+Dw)
\end{bmatrix} \\
&=\begin{bmatrix}
H_{1}u^{2}+H_{2}v^{2}+H_{3}w^{2}+H_{4}uv+H_{5}vw+H_{6}uw \\
0 \\
 \alpha dCw^{2}+L_{1}vw+L_{2}uw+ \alpha
dBv^{2}+L_{3}uv+\alpha dA\frac{u^{2}}{\omega }
\end{bmatrix}
\end{align*}
and
\begin{gather*}
L_{1} =\alpha d(B+C), \quad
L_{2}=\alpha d(A+\frac{C}{\omega }),\quad
L_{3}=\alpha d(A+\frac{B}{\omega }), \\
H_{1} =-A(bA+\frac{1}{\omega }(\frac{b}{\alpha }+b+d)),\quad
H_{2}=-B(b+d+bB), \\
H_{3} =-C(b+d+bC+\frac{b}{\alpha }D),\quad
H_{4}=-A(b+d+2bB)-\frac{B}{\omega }(b+d+\frac{b}{\alpha }), \\
H_{5} =-(B(b+d+\frac{b}{\alpha }D)+C(b+d+2bB)), \\
H_{6} =-A(b+d+b(2C+\frac{D}{\alpha }))
 -\frac{C}{\omega }(b+d+\frac{b}{\alpha }).
\end{gather*}

Now we determine approximately the $d=d^{\ast }$-section of the
center manifold $M$ which is tangent to the $(u,v)$- plane at the origin.
This is $w=h(u,v),$ $h(0,0)=h_{u}'(0,0)=h_{v}'(0,0)=0$,
and $h$ sufficiently smooth. Then
\begin{equation}
w=h(u,v)=\frac{1}{2}(h_{11}u^{2}+2h_{12}uv+h_{22}v^{2})+o(\mid (u,v)\mid
^{2}).  \label{centr}
\end{equation}

Restricting the system to the center manifold, if
$(u(t),v(t),w(t))$ is a solution of \eqref{eq4} near the origin with
a value on $M$, then it stays locally in $M$, i.e.,
\begin{equation*}
w(t)\equiv h(u(t),v(t)).
\end{equation*}
But then
\begin{equation}
w'(t)-h_{u}'(u(t),v(t))u'(t)-h_{v}'(u(t),v(t))v'(t)\equiv 0,  \label{eq5}
\end{equation}
so by using \eqref{eq4}, omitting terms of order at least three and
equating the coefficients to zero,
\begin{gather*}
h_{11} = 2\frac{-2\alpha dB\omega ^{3}-L_{3}a_{2}(d^{\ast
})\omega ^{2}+2\alpha dA\omega ^{2}+\alpha dAa_{2}^{2}(d^{\ast })}{\omega
a_{2}^{3}(d^{\ast })}, \\
h_{12} =  \frac{1}{a_{2}^{2}(d^{\ast })}(-2\alpha
dA+2\alpha dB\omega +a_{2}(d^{\ast })L_{3}), \\
h_{22} =  2\frac{2\omega \alpha dA-2\alpha dB\omega
^{2}-L_{3}a_{2}(d^{\ast })\omega +a_{2}^{2}(d^{\ast })\alpha dB}{
a_{2}^{3}(d^{\ast })}.
\end{gather*}
To restrict \eqref{eq4} to the $d=d^{\ast }$-section of
the center manifold $M$, we introduce  new coordinates, $y_{1}=u$,
$y_{2}=v$,
$y_{3}=w-h(u,v)$ and \ref{eq4}) becomes
\begin{equation} \label{eqcentr}
\begin{aligned}
y_{1}' &= \omega y_{2}+\frac{1}{2}h_{22}H_{5}y_{2}^{3}+(
h_{12}H_{5}+\frac{1}{2}h_{22}H_{6})y_{1}y_{2}^{2}+ (
\frac{1}{2}H_{5}h_{11}+H_{6}h_{12})y_{1}^{2}y_{2}   \\
&\quad +\frac{1}{2}h_{11}H_{6}y_{1}^{3}
+H_{1}y_{1}^{2}+H_{2}y_{2}^{2}+H_{4}y_{1}y_{2}+O(\mid y\mid ^{4})
 \\
y_{2}' &=-\omega y_{1}.
\end{aligned}
\end{equation}
Applying the Bautin's formula  \cite[Lemma 7.2.7]{Farkasmotion},
 we can see that
\begin{equation}
\frac{4\omega }{3\pi }V_{y_{1}y_{1}y_{1}}'''(0,0)
=(3h_{11}h_{12}H_{5}+h_{22})H_{6}+\frac{2}{\omega }(H_{1}+H_{2})H_{4}
 \label{bautin}
\end{equation}
\end{proof}

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\end{document}
